rs47233395 SNP Detail

Summary

• ID
  rs47233395
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105245863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TATCTCCTTA CAGCATCATG CATTTTCAGG CTGCAGGTGG
  AGTACAGCAT GTTGCCCCTT GTACAATACA TACTCTCAGC AAACCAAGCC ACCTTACTAA
  R
  AATGCACATA CACCTGGCTA TGTATAACCA GACATGCCCG TGGCACACTT AATTACAGCT
  CTCTTAGTTT TGGCGAGCAC ATCCACATGT AGTTATCCTC T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145608132	ENSMUSSNP6793441	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47233395					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105245863 () rs orientation: forward

Symbol	Name	Function Class
Hpx	hemopexin	within coordinates
Tssr68381	transcription start site region 68381	350 bp downstream
Tssr74058	transcription start site region 74058	1449 bp upstream
Tssr74059	transcription start site region 74059	1117 bp upstream
Tssr74060	transcription start site region 74060	1109 bp upstream
Tssr74061	transcription start site region 74061	1061 bp upstream
Tssr74062	transcription start site region 74062	1037 bp upstream
Tssr74063	transcription start site region 74063	1027 bp upstream
Tssr74064	transcription start site region 74064	1000 bp upstream
Tssr74065	transcription start site region 74065	974 bp upstream
Tssr74066	transcription start site region 74066	301 bp upstream
Tssr74067	transcription start site region 74067	289 bp upstream
Tssr74068	transcription start site region 74068	276 bp upstream
Tssr74069	transcription start site region 74069	231 bp upstream