rs47236403 SNP Detail

Summary

• ID
  rs47236403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164118271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT GTACTCATGC CTTTCTTTTA
  Y
  GGAGAGGAGA GAGGAATCTG TTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148221306	ENSMUSSNP3745571	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47236403					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164118271 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	761 bp proximal
Svs4	seminal vesicle secretory protein 4	within coordinates
Tssr21549	transcription start site region 21549	393 bp downstream
Tssr21550	transcription start site region 21550	281 bp downstream
Tssr21551	transcription start site region 21551	751 bp upstream
Tssr21552	transcription start site region 21552	795 bp upstream
Tssr27409	transcription start site region 27409	355 bp upstream
Tssr27410	transcription start site region 27410	325 bp upstream
Tssr27411	transcription start site region 27411	300 bp upstream
Tssr27412	transcription start site region 27412	273 bp upstream
Tssr27413	transcription start site region 27413	258 bp upstream
Tssr27414	transcription start site region 27414	246 bp upstream
Tssr27415	transcription start site region 27415	227 bp upstream
Tssr27416	transcription start site region 27416	726 bp downstream
Tssr27417	transcription start site region 27417	735 bp downstream
Tssr27418	transcription start site region 27418	806 bp downstream
Tssr27419	transcription start site region 27419	816 bp downstream
Tssr27420	transcription start site region 27420	836 bp downstream
Tssr27421	transcription start site region 27421	860 bp downstream
Tssr27422	transcription start site region 27422	878 bp downstream
Tssr27423	transcription start site region 27423	916 bp downstream
Tssr27424	transcription start site region 27424	946 bp downstream
Tssr27425	transcription start site region 27425	967 bp downstream
Tssr27426	transcription start site region 27426	1225 bp downstream
Tssr27427	transcription start site region 27427	1903 bp downstream
Tssr27428	transcription start site region 27428	1949 bp downstream
Tssr27429	transcription start site region 27429	1975 bp downstream