rs47237955 SNP Detail

Summary

• ID
  rs47237955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90397741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGAGGAAT GGGATGAAAA ATACTCTTGC AGTCTTGTGT
  GGGCCACAGA CACCTTCCCT TCTTCCATTC TGTCCTAAAA TATCCCCAGA AATTGGAGTC
  Y
  TTGGGTAGTT CTGATATTGA GAAGCAAGTG ACAGAAACTT AGCCTAAAAC CTGGGGAAAC
  AAAGTTCCCG AAAGTGAGAT CAGGGATTCT AGGTATCCTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60424447	NES15924365	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47237955					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424447	NES15924365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90397741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13464	CpG island 13464	318 bp proximal
Rr397812	regulatory region 397812	564 bp upstream
Rr580375	regulatory region 580375	589 bp proximal
Rr580376	regulatory region 580376	604 bp proximal
Rr580377	regulatory region 580377	716 bp proximal
Rr580378	regulatory region 580378	1040 bp proximal
Snapin	SNAP-associated protein	Intron
Tssr34231	transcription start site region 34231	1277 bp upstream
Tssr34232	transcription start site region 34232	283 bp downstream
Tssr34233	transcription start site region 34233	348 bp downstream
Tssr34234	transcription start site region 34234	541 bp downstream