rs47238017 SNP Detail

Summary

• ID
  rs47238017
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156765377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG TCTATGTAGT GAATTCCACC
  T
  ACAGCTAGAG CTACATAGTG AGGCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145809547	ENSMUSSNP399925	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47238017					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156765377 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930439D14Rik	RIKEN cDNA 4930439D14 gene			987 bp upstream
Cpgi904	CpG island 904			903 bp proximal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr367037	regulatory region 367037			1005 bp upstream
Rr421284	regulatory region 421284			20 bp distal
Rr421285	regulatory region 421285			574 bp proximal
Rr421286	regulatory region 421286			1001 bp proximal
Rr421287	regulatory region 421287			1163 bp proximal
Rr421288	regulatory region 421288			1495 bp proximal
Rr421289	regulatory region 421289			1570 bp proximal
Rr421290	regulatory region 421290			1956 bp proximal
Tssr9581	transcription start site region 9581			1850 bp upstream
Tssr14474	transcription start site region 14474			29 bp downstream
Tssr14475	transcription start site region 14475			975 bp downstream
Tssr14476	transcription start site region 14476			1004 bp downstream
Tssr14477	transcription start site region 14477			1726 bp downstream
Tssr14478	transcription start site region 14478			1746 bp downstream
Tssr14479	transcription start site region 14479			1821 bp downstream