rs47238999 SNP Detail

Summary

• ID
  rs47238999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181504899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCTCTTT ACTGGCTTGC
  TTCCCCTGGC TTGCTCAGCC TGCTCTCTTA TAGAACCAAG ACTACCAGCC CAGAGATGGT
  CCCACCCACA AGGGGCCTTT CCCCCTTGAT CACTAATTGA GAAAATGCCT TACAGTTGGA
  TCTCATGGAG GCATTTCCCC AACTGAAGCT CCTTTTTCTG TGATAACTCC AGCTGTGTCA
  R
  GTTGACACAA AACTAGCCAT AAATATTTGG CTTACATGTC AAGAGTCCAT TGTTTAGGGG
  AGTCAATGCA GGAACTTGCT GCAGAAACAG AAGCCATTAC CATGGTGGGA TGCTGCTTAC
  TGGTTTGCTC CTCATGATTT ACTCAGATTC TCAGATTGCT TTTTTCTCTC TCTCCATTTT
  GTTCTTAGAC TTACTTAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356784590	MGP_WTSI_2_181597811	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	A	A	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs47238999					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	A	A	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356784590	MGP_WTSI_2_181597811	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181504899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12941	CpG island 12941	855 bp proximal
Gm57457	predicted gene, 57457	within coordinates
Polr3k	polymerase (RNA) III (DNA directed) polypeptide K	1254 bp upstream
Rr56343	regulatory region 56343	302 bp proximal
Rr397596	regulatory region 397596	1061 bp upstream
Tssr22352	transcription start site region 22352	1312 bp upstream
Tssr22353	transcription start site region 22353	1336 bp upstream
Tssr28245	transcription start site region 28245	1092 bp downstream