rs47239554 SNP Detail

Summary

• ID
  rs47239554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:71368823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTAGCT GTCTTGGAAC
  TCACTCTGTA GACCAGGCTG TCCTCTAACA CAGAGATCTT CCTGCTCTGG AATTAAAGGA
  GTGTGCCACC ATCACCCAAC TTCAAATACC TTTTCAGTGA AGAAAAAGGC ATCAGACTTT
  ATGGGTTACT TGAGTTTACC CAGCTTAGAA AAAGTAAGTA CTTAGCCACA AAGACCTATG
  Y
  AGTCATTCTT CATTTGTACA TGGGGCCTTT CTGGTTCTCT GGTGGAGTTG GTTATTTTGT
  GTTTAACTGG TTTTTAGTGA CCAAAGGCAT TCTATAAGGC CTTAAGAATA AGGTTTTTGA
  CATACCAAGA TATATATATA TATATTTAAA ATTTTTTTAG GTCAACAGTC TCAGAGATGT
  TTCTCTTAAT TTATCTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52444344	NES15422750	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47239554					SNP	T	T	T	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52444344	NES15422750	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:71368823 () rs orientation: forward

Symbol	Name	Function Class
4930474H06Rik	RIKEN cDNA 4930474H06 gene	363 bp upstream
Dact1	dishevelled-binding antagonist of beta-catenin 1	1942 bp downstream
Rr267972	regulatory region 267972	378 bp proximal