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rs47239554 SNP Detail
Summary
  • ID
    rs47239554
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:71368823 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCTCTAGCT GTCTTGGAAC
    TCACTCTGTA GACCAGGCTG TCCTCTAACA CAGAGATCTT CCTGCTCTGG AATTAAAGGA
    GTGTGCCACC ATCACCCAAC TTCAAATACC TTTTCAGTGA AGAAAAAGGC ATCAGACTTT
    ATGGGTTACT TGAGTTTACC CAGCTTAGAA AAAGTAAGTA CTTAGCCACA AAGACCTATG
    Y
    AGTCATTCTT CATTTGTACA TGGGGCCTTT CTGGTTCTCT GGTGGAGTTG GTTATTTTGT
    GTTTAACTGG TTTTTAGTGA CCAAAGGCAT TCTATAAGGC CTTAAGAATA AGGTTTTTGA
    CATACCAAGA TATATATATA TATATTTAAA ATTTTTTTAG GTCAACAGTC TCAGAGATGT
    TTCTCTTAAT TTATCTACTT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
BTBR T<+> Itpr3/J
CAST/EiJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
ss52444344 NES15422750 PERLEGEN MM_PANEL2 f SNP T T T C T C T C C
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
BTBR T<+> Itpr3/J
CAST/EiJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
rs47239554 SNP T T T C T C T C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52444344 NES15422750 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:71368823 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930474H06Rik RIKEN cDNA 4930474H06 gene 363 bp upstream
Dact1 dishevelled-binding antagonist of beta-catenin 1 1942 bp downstream
Rr267972 regulatory region 267972 378 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory