rs47240482 SNP Detail

Summary

• ID
  rs47240482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:131992966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGAACT GCCTGAGTAT
  TTCAAAGACT TTTAAATACG AATTAGGTGC ATTGCTTCCA TGTGGATATG CCATAAGCTG
  TCCTGTAGAT TCAGCAGCAA ACTTCTGAAA TAAATTAGTA TAAGTATGGG CCAGCAAGTG
  CTGAACGGTG AGCTGGGTGC CCTTACGTGG GCCACCTGGA TTTCTCTTCT GTGTCACCTG
  Y
  ATAATAATTC TGTAAAATGT AAGTTTTATA CATGGACTCA TGGCTATGTC GGTTCTTGGG
  TATGTGGAGG TCAGAGGATA ACTTAAGGGT GTTTCTTGGT GCTCTGGTAC CATCTATCTT
  ATCTTTTTGA GACAAGGACT CTCCCTATCC TGGGCCTTCA GATAGGCTGA GCTGACTATT
  GGCCAGTGAG CCCCAGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60842570	NES16009063	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47240482					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60842570	NES16009063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:131992966 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Gm42439	predicted gene 42439	within coordinates
Tssr53573	transcription start site region 53573	215 bp upstream
Tssr53574	transcription start site region 53574	597 bp downstream
Tssr53575	transcription start site region 53575	1962 bp downstream