rs47240819 SNP Detail

Summary

• ID
  rs47240819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:147165418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACA TAGCTGTCGG TCTACCTCCT
  Y
  CGGTGGGCTG GTTGCTTCCG GAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134013071	ENSMUSSNP305470	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss322086693	CHEV_6_147212442	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47240819					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:147165418 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18178	CpG island 18178	within coordinates
D6Mit26	DNA segment, Chr 6, Massachusetts Institute of Technology 26	746 bp proximal
Pthlh	parathyroid hormone-like peptide	within coordinates
Rr145960	regulatory region 145960	within coordinates
Tssr59618	transcription start site region 59618	178 bp upstream
Tssr64140	transcription start site region 64140	46 bp upstream
Tssr64141	transcription start site region 64141	13 bp downstream
Tssr64142	transcription start site region 64142	43 bp downstream
Tssr64143	transcription start site region 64143	62 bp downstream
Tssr64144	transcription start site region 64144	204 bp downstream