rs47241003 SNP Detail

Summary

• ID
  rs47241003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4267630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCTCAG TGGGGGAATC
  CTTGAAGACC CTCACAGTCC TCTACTCAAG CTCTTGCACC TGCTCCGACA CCCCCCTTCT
  CTAGCACTTG GAGACAGACA CTCTCCTAGA CAAGGGATAG GCTGGGCCTT GGCAACCAGT
  AGGGCGGGAT CATTGTGCCT CTGGCCCACC AACCAATCCA GCCATTTTGT GTGCCCTGGT
  Y
  CTCTTTTCCT GCACTTGATG ACTATGGAGG CTAGATAGTC CTGCGACACC TGTGCCAGGT
  CACCTATTTT GTAACTTTGA CTTTTCTCAC AGCCCTTACC TGATACGGTT GGTGGGAGAA
  TGAGAACCCT GGGAGTTACT TTGTATTACA TTTTATTTGG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61075543	NES16047937	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47241003					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61075543	NES16047937	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4267630 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20046	CpG island 20046	187 bp distal
Prr36	proline rich 36	171 bp upstream
Rr658993	regulatory region 658993	within coordinates
Tssr80255	transcription start site region 80255	1619 bp upstream
Tssr80256	transcription start site region 80256	627 bp upstream
Tssr80257	transcription start site region 80257	587 bp upstream
Tssr80258	transcription start site region 80258	504 bp upstream
Tssr80259	transcription start site region 80259	462 bp upstream
Tssr80260	transcription start site region 80260	378 bp upstream
Tssr80261	transcription start site region 80261	329 bp upstream
Tssr80262	transcription start site region 80262	127 bp upstream