rs47242121 SNP Detail

Summary

• ID
  rs47242121
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80038937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGGTTC AGTTTGCTTT
  ATTGGGTAGG AGGTCTGTAC AGAGCACTTC AGAAAGGATG CATACAGCCA TCCATCTCAG
  GCGAGACCTC TCTCACCCAG AGGCTGCTAG GCCCATATGT GTCCAGCCCC GAGGTATCTT
  TGCACACTCA CACGCACTCT GTGCTCATGT GTGTCGTGGG AGTTGAGGTG TGCCTACAAA
  M
  TCCTTGGGCA CTGCCCTCTC TCCTCTCTGA GCCACTCTAC CAACATTGGA CTGTCACGGC
  AGCTTCTTTA ACAGAAGCAG TTCGGTGTGG TTAGGACAGG TCACGTGCTC GTCACGAGTG
  GAGTCTGTCC CTCCACCCTT GCACACCTGC CCTGAGCTGC TGTCCTGCCT TGTAACAAAG
  GCTAGGAATC CAGCAGATGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63569759	NES17023032	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A		C	C	A	C
ss148214218	ENSMUSSNP1879086	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47242121					SNP	C	C	C	C	C	C	C	C	C	C	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63569759	NES17023032	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80038937 () rs orientation: forward

Symbol	Name	Function Class
Rr308002	regulatory region 308002	1337 bp distal
Rr308003	regulatory region 308003	1864 bp proximal
Rr310675	regulatory region 310675	1481 bp proximal
Rr314587	regulatory region 314587	537 bp distal
Tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1	within coordinates