rs47242954 SNP Detail

Summary

• ID
  rs47242954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32572626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG TCCTGAGCTC AGCCCCTGCA
  Y
  TTTATAAAAT GGCTGTGGTA GCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss148200774	ENSMUSSNP624034	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss321505228	CHEV_5_32717655	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs47242954					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32572626 () rs orientation: forward

Symbol	Name	Function Class
Rr609355	regulatory region 609355	1750 bp distal
Rr609356	regulatory region 609356	1360 bp distal
Rr609357	regulatory region 609357	333 bp distal
Rr609358	regulatory region 609358	1350 bp proximal