rs47243235 SNP Detail

Summary

• ID
  rs47243235
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97144246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGATAAG TCCAGACACT
  TTAAATTTGG GGTTGTGGAG AAACTGCCCG TGGAGATGCT GGTGATGTTG TTGTGGCGAA
  GAATTAAGGT GCTCAGCTTG ACAAACGACA CCGGGATCCA GTCGGCATCC AACAGTCCGA
  TTCTGTTATA GCTCAGATCC AGTCTTTTAA TCAGTCTGAA AAGGTTCCCG GGCACCTTAG
  M
  TAGGTTTTTG TTGGTGCAGC TGACAATGTC GGTGGCACAG ATGCAAGCAG TGGGGCACAT
  TCCTGAGGCG CTGGGGCTCA CCATCACTGC GATCACCAAC AGACACAGCA GCTCTCTGCA
  ACCCGGTTTG ACAGCTCTAG GCAGGGTGGG CAGTGTGTGG AACCTTAACG ACATTATGGT
  CGCCTCTGAG TCTCTTGCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63609802	NES17042113	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A		A	A	A	A		C
ss325076401	CHEV_15_97076796	CHEVERUD	SCREENING_POP	f	SNP							A					C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47243235					SNP	A	A	C	A	A	A	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63609802	NES17042113	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97144246 () rs orientation: forward

Symbol	Name	Function Class
Amigo2	adhesion molecule with Ig like domain 2	within coordinates
Cpgi7615	CpG island 7615	774 bp distal
Cpgi7616	CpG island 7616	within coordinates
Gm57814	predicted gene, 57814	728 bp downstream
Pced1b	PC-esterase domain containing 1B	742 bp upstream
Rr312356	regulatory region 312356	within coordinates
Tssr132851	transcription start site region 132851	679 bp downstream
Tssr132852	transcription start site region 132852	593 bp upstream
Tssr132853	transcription start site region 132853	646 bp upstream
Tssr132854	transcription start site region 132854	1026 bp upstream
Tssr136109	transcription start site region 136109	877 bp downstream
Tssr136110	transcription start site region 136110	941 bp downstream