rs47243461 SNP Detail

Summary

• ID
  rs47243461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172695321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATGTAGG TAGGAGCTCT
  GATTCCCACA ACCTACATAG AGAGCCTGGC ATGAAGCAGT CGCCTGAGAC CCCTGTGCTG
  GAGAAGCAGA GAGGGGTGAA CTCGTGGAAC TCAGTGGCTG CTCGGTCTCG CAACTGGTGA
  GCTCCAGGCT CAGTGACAGA ACCCGCCTCA AAGAACAAGA TGGAGGGAGA ACAGAGAGGA
  R
  GCTCGGAGGC AGAGCTCTGG GTGCTCATCC AGAGTGTCTG GGTTCAGTGC CAGCATGCAC
  ACGGAGGGTC TGGACCACGG AGGGTCTGGA CCACGGAGGA TCTCAACTGA CCTCACTCCG
  GTTCCAGGAG ATCCAGTGCC TCCTCTGGCC TCTGTGAGCT CTGCCTGCAC ACAGACACAC
  AACAGGCGAA CACACCCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148324239	ENSMUSSNP6932060	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320620532	CHEV_2_172679029	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47243461					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172695321 () rs orientation: forward

Symbol	Name	Function Class
Gm36254	predicted gene, 36254	within coordinates
Rr571755	regulatory region 571755	604 bp proximal
Rr571756	regulatory region 571756	829 bp proximal