rs47246448 SNP Detail

Summary

• ID
  rs47246448
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58954125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCGGCCG GCCGGGTGTT
  TTAAATGTGT AAGGATTATA TTTCTATCCC TGGTGCATGA CATCTATGTG AAAATCTTGC
  TAGATTGATT TTATTTCTTA GTGATGTTTA AGGCTGTGCG AAGACCCAAA CATTTCCCCT
  GACATCATCC TTCTCATTTC TGGCCTTTTG CGGGCAGTTG GATGACTATT CTTATGTCTT
  M
  AATTGGACTC CAGCGCATTG TCTTGTGGTG CGTGGAGGAC TTCAGAGGCA GGAGATTGTA
  GGGATCTGGT GAGAGGCGCA CTGCCTGGGT AGCAATGTGC ACACAGCGCG GCGGTTGCGC
  ATCTGGAGCT GCAGTGCGCC GGTAGCGCAG TTCCTAATGC GGTGGTAGCA ATGGCCCGAG
  GTACCGGAGC GTGCTGGGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52643919	NES15465400	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47246448					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52643919	NES15465400	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58954125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5731	CpG island 5731	within coordinates
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	258 bp upstream
Rr273002	regulatory region 273002	within coordinates
Rr281494	regulatory region 281494	within coordinates
Tssr120082	transcription start site region 120082	253 bp upstream
Tssr120083	transcription start site region 120083	323 bp upstream
Tssr120084	transcription start site region 120084	1382 bp upstream
Tssr120085	transcription start site region 120085	1508 bp upstream
Tssr120086	transcription start site region 120086	1550 bp upstream
Tssr120087	transcription start site region 120087	1573 bp upstream
Tssr120088	transcription start site region 120088	1952 bp upstream