rs47248058 SNP Detail

Summary

• ID
  rs47248058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74789223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATTTGA ACTCCAGACC
  TTTGGAAGAG CAGTCGGGTG CTCTTACCCA CTGAGCCATC TCACCAGCCC AGGTGTGGAG
  TCTCTTAATA AACTTACATA GCAGAGTCCA GAGGAAGAAC CCAAAAGAGC CCAGGTTTCC
  GAGCCAAACT ATAATATATG GTTAAACCAT GAGTCTTTGT CACCTTAAAG GTGATTCCTG
  Y
  AAGGACTCAG CAAGAAAGGA GACAGAGATC ATGGCATGGC CATGGTTGCA TGGCTGGGAA
  ATGTCAGCCA ATCCTCTGAG GAGCTGCAGA GTGAAGGGGG ACGCGGCTGG GAACTGGAGG
  AGCCACTGCC CTCATTAGAA CGTGGAGAAG AGCTTGGTCT AACTCTGTTC CTATCCCAAT
  ATTTTTAGAA CTTGCAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52570518	NES15642377	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47248058					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52570518	NES15642377	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74789223 () rs orientation: forward

Symbol	Name	Function Class
D15Mit28	DNA segment, Chr 15, Massachusetts Institute of Technology 28	1857 bp distal
Gm62792	predicted gene, 62792	within coordinates
Rr504378	regulatory region 504378	450 bp proximal
Tssr131597	transcription start site region 131597	1331 bp upstream
Tssr131598	transcription start site region 131598	1379 bp upstream