rs47248946 SNP Detail

Summary

• ID
  rs47248946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23791843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCTAAAT AGACCCGTTC
  TACCAGTCAA AGTGTCCTTA CATGTCACCT ACGTTTATGT CCACACGTTA CTGCTGCTGT
  CGGCTGTCAT CAGAGCTGCT CTGTGTTGCA ACAGGAAACC AACCAAGGTA CAGAGAGAGA
  GAGAGAGCTT GGGACTACTT AGTGCTCAGC CCTACACAGA CATTTACATC GTCCCGCTCC
  R
  AGACTCAGCA GACATCATGG GAAAAAAGGA GGAAACCGTG CAGGAGTCAG AGGATGCAAT
  GGACTGTTGT ACAGCACTGT ATTCCAGGAT GGCCTGCTCA CTGTGCTCAC AAACTTACAG
  CAGATGTAAA TGACCTGAAC AAGACTGGGT CTGTCAACAT TCTGCCATGA AGAGGGGAGG
  GGCTTACCAG GCCCCTCCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148061178	ENSMUSSNP6680571	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47248946					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23791843 () rs orientation: forward

Symbol	Name	Function Class
Rr117577	regulatory region 117577	within coordinates
Rr117578	regulatory region 117578	1558 bp proximal
Srpk2	serine/arginine-rich protein specific kinase 2	within coordinates
Tssr1438	transcription start site region 1438	13 bp downstream
Tssr50280	transcription start site region 50280	218 bp upstream