rs47249368 SNP Detail

Summary

• ID
  rs47249368
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126576489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TGAGCATGGA ATTCCATTCG GGTGTGGCAT AATGGCTCAT
  GCTTGTAATG CCAGCACTGA TAAGGTAGGT AGATTGCTCC AAGTCAGAAG TCATATTGAG
  T
  ACCACGTGAG CCAGGACTAC ACAGTAAAAT CCTGCAAAAA TAAGTGATTG GGGCTGAAGG
  CTAAGTTTGT TCTCAGAGGT TAAGACTGCT TACTGCTGCC T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145877142	ENSMUSSNP577327	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47249368					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126576489 () rs orientation: forward

Symbol	Name	Function Class
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	Intron
Cdiptos	CDIP transferase, opposite strand	914 bp upstream
Cpgi19724	CpG island 19724	273 bp distal
Rr368439	regulatory region 368439	1008 bp downstream
Rr655656	regulatory region 655656	1540 bp distal
Rr655657	regulatory region 655657	454 bp distal
Tssr2401	transcription start site region 2401	719 bp downstream
Tssr69141	transcription start site region 69141	1693 bp downstream
Tssr69142	transcription start site region 69142	1020 bp downstream
Tssr69143	transcription start site region 69143	917 bp downstream
Tssr69144	transcription start site region 69144	895 bp downstream
Tssr69145	transcription start site region 69145	851 bp downstream
Tssr69146	transcription start site region 69146	773 bp downstream
Tssr69147	transcription start site region 69147	740 bp downstream
Tssr69148	transcription start site region 69148	698 bp downstream
Tssr69149	transcription start site region 69149	1716 bp upstream
Tssr74865	transcription start site region 74865	1901 bp upstream
Tssr74866	transcription start site region 74866	1474 bp upstream
Tssr74867	transcription start site region 74867	1470 bp upstream
Tssr74868	transcription start site region 74868	1212 bp upstream
Tssr74869	transcription start site region 74869	1186 bp upstream
Tssr74870	transcription start site region 74870	1175 bp upstream