rs47249660 SNP Detail

Summary

• ID
  rs47249660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122522548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCTTGCCT TCTGGACTGT AGATGAGTCC TCACTGTGAT
  CTTTCTGTCC TAGAGTTGGT TGGTTGGGAA TTGCAAATCC ACCCACTGTC ACCTTTGCGC
  R
  TAGAGGGAAG CTGACTCGGC CCACAGCGCA CCCCAGCGGC GGTCTGGAGT CCTTCTAGCC
  TTGGCCACTT GGCTTCCGGA GGGCTCGCCA GTCAGCGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135748504	ENSMUSSNP394283	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320914168	CHEV_3_122431817	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47249660					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122522548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	within coordinates
Pde5a	phosphodiesterase 5A, cGMP-specific	274 bp upstream
Rr584392	regulatory region 584392	within coordinates
Rr584393	regulatory region 584393	23 bp proximal
Rr584394	regulatory region 584394	181 bp proximal
Rr584395	regulatory region 584395	682 bp proximal
Rr584396	regulatory region 584396	1563 bp proximal
Tssr31509	transcription start site region 31509	45 bp upstream
Tssr31510	transcription start site region 31510	105 bp upstream
Tssr31511	transcription start site region 31511	220 bp upstream
Tssr31512	transcription start site region 31512	264 bp upstream
Tssr31513	transcription start site region 31513	299 bp upstream
Tssr31514	transcription start site region 31514	810 bp upstream
Tssr31515	transcription start site region 31515	951 bp upstream
Tssr31516	transcription start site region 31516	971 bp upstream
Tssr31517	transcription start site region 31517	1019 bp upstream
Tssr31518	transcription start site region 31518	1148 bp upstream
Tssr31519	transcription start site region 31519	1214 bp upstream
Tssr31520	transcription start site region 31520	1237 bp upstream
Tssr31521	transcription start site region 31521	1317 bp upstream
Tssr31522	transcription start site region 31522	1353 bp upstream