rs47249858 SNP Detail

Summary

• ID
  rs47249858
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGCTCCC TAGGTGGTCA
  CAGAACAAAT CCAGCCAGCC AGATGCAGTG CTGCCTTTAG CTTTAGCTAC CTTTGTGGAG
  TTATGAATGG CAGACAGGAT GGTATTCTTG ATGTCACCTA AACTTAGGTT TAAAAAAGTT
  TTTATTTTTT CATTTCCTTT TTCTGAACAG TAACTCTTAA TGTGGTATCT AAGGCAAAGC
  C
  TGTAAAGGGA ATCTATTAAT TCCCCAAACA CATCAGGCTT ATTTTGTTCT GTTATAGAGC
  CAAATGTATG TTTCTCCAGG TTAGCTCTGT TTCGATTGAA TTTAGGGCAG GTGGCTCGCA
  TGTCTCCAGC TAATTTTTGA GCTATTATTT TCCATATGGT GGCAGAGATA GCAGGAGTGA
  GCTTGCGCCA TAGGAAGTCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145614767	ENSMUSSNP5800131	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47249858					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104400 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr68401	transcription start site region 68401	1555 bp downstream
Tssr74117	transcription start site region 74117	1667 bp upstream
Tssr74118	transcription start site region 74118	1620 bp upstream
Tssr74119	transcription start site region 74119	1222 bp upstream
Tssr74120	transcription start site region 74120	1205 bp upstream
Tssr74121	transcription start site region 74121	1142 bp upstream
Tssr74122	transcription start site region 74122	1125 bp upstream
Tssr74123	transcription start site region 74123	1092 bp upstream
Tssr74124	transcription start site region 74124	1047 bp upstream
Tssr74125	transcription start site region 74125	1036 bp upstream
Tssr74126	transcription start site region 74126	1000 bp upstream
Tssr74127	transcription start site region 74127	849 bp upstream
Tssr74128	transcription start site region 74128	769 bp upstream
Tssr74129	transcription start site region 74129	238 bp upstream
Tssr74130	transcription start site region 74130	189 bp upstream
Tssr74131	transcription start site region 74131	within coordinates
Tssr74132	transcription start site region 74132	148 bp downstream
Tssr74133	transcription start site region 74133	847 bp downstream
Tssr74134	transcription start site region 74134	1074 bp downstream
Tssr74135	transcription start site region 74135	1157 bp downstream
Tssr74136	transcription start site region 74136	1225 bp downstream
Tssr74137	transcription start site region 74137	1291 bp downstream
Tssr74138	transcription start site region 74138	1321 bp downstream
Tssr74139	transcription start site region 74139	1355 bp downstream
Tssr74140	transcription start site region 74140	1410 bp downstream
Tssr74141	transcription start site region 74141	1810 bp downstream
Tssr74142	transcription start site region 74142	1953 bp downstream