rs47251196 SNP Detail

Summary

• ID
  rs47251196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6037429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGCATGCT CTAACAGAGC AGGTGGGCAC GGGCTCTGAG
  ACTCCTGCAT TTCTAACCAA CTGCCCAGGT GGGCTGCAGA CCAACAGTTA GCTGAAGATG
  Y
  CTGGTGCTTG CTGGACTTTC TGCAATATCT GATTATTCTC TGGGGACCAG CATGTGTCTT
  AGCTTTGTCA CACATACTCC TGAAGCTGTG GCCCGAGGCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60525713	NES16544499	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47251196					SNP	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525713	NES16544499	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6037429 () rs orientation: forward

Symbol	Name	Function Class
Gm35525	predicted gene, 35525	349 bp downstream
Synj2	synaptojanin 2	within coordinates
Tssr146309	transcription start site region 146309	1037 bp downstream