rs47251789 SNP Detail

Summary

• ID
  rs47251789
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69335364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAAATGAG TTTGCCTAGG GGTAAAAATG TGGGTGAGAA
  AGGCACAGCT TGGAGCGATC CCAGCTCCCC TCTGGGCTCC CAGTTTCCGT GTTCACTCTT
  G
  ATTTTTTTTT TTTTCCACGA ATAGTGTGCG AGTTTGAGAG GCATTGCCCT GTGCTTCTTC
  CTGGAGCCCC TGCAGCCTCT CCTGGTCCCA GGCAGGAAA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145084099	ENSMUSSNP4898385	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47251789					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69335364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	1088 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664456	regulatory region 664456	1111 bp distal
Rr664457	regulatory region 664457	610 bp distal
Rr664458	regulatory region 664458	756 bp distal
Rr664459	regulatory region 664459	within coordinates
Tssr77604	transcription start site region 77604	1995 bp downstream
Tssr77605	transcription start site region 77605	1982 bp downstream
Tssr77606	transcription start site region 77606	1635 bp upstream
Tssr77607	transcription start site region 77607	1701 bp upstream
Tssr77608	transcription start site region 77608	1722 bp upstream
Tssr77609	transcription start site region 77609	1757 bp upstream
Tssr77610	transcription start site region 77610	1828 bp upstream