rs47251991 SNP Detail

Summary

• ID
  rs47251991
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78956817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGTTCC AGGACAGTCA
  GAGATACACA GAGAAACTCT GCCTTGAAAA CACAAAACAA ACAATGGATA GCTAAGTAAA
  CAGACAAACA AGCAGACAAA GACAAAAAAA AAAAAAAAAT TGCCAAATCA TGACTCTGCC
  CAAGCTCATC CACTAAACTA CGGAAGGAAC AGGGTGGCTC TCAACCTACT TGGATTCTGC
  S
  GCTTTTCAGC TCTGTGATGC TTCAAAGGCA GTTCAATAGA GACACTTATT TCAGATTTGT
  ACGTTTTTGT CTTTTCCCAG AAAAATGCTG CAAGTCCCTT TGTTGTTTTC TTGTTTTGTT
  TCTGTTTTGT TTTTTGTTTT TGTTTTTGTT TGGTTGGTTT TTTTTTTTTT TTTTTTAGAT
  AAGATCTCAC TACCTAGTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61654161	NES17605688	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47251991					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61654161	NES17605688	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78956817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4797	CpG island 4797	1910 bp proximal
Gm46359	predicted gene, 46359	932 bp upstream
Gm56547	predicted gene, 56547	883 bp upstream
Rr387474	regulatory region 387474	within coordinates
Tssr114072	transcription start site region 114072	1887 bp upstream
Tssr116800	transcription start site region 116800	1656 bp upstream