rs47252095 SNP Detail

Summary

• ID
  rs47252095
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55253524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCTTAAG GTGGGACAAT
  GTTCCGAGCA GAGCTAGCGT CACATGTACA ATGTGGCTGG GGCAAAGGCA GCCGTAAAGT
  TTGGCGATGA AATCTCCGGT CTTTTCCAGT AAATTGGGGG GGGTGTGGTG GGAGGAGACT
  GGCTGTGTGC CGAGGCTGCC TGCCCCTGTG CGGGGGGAAA ACGACCCAAA AGTCGCGACT
  R
  TTTTGAAGGA AAGGAGGGAG TTTGATAGGC AGTACGTTCT GCAATCATCA TCGCCTAAAG
  TAAGAAATTG ATCACCTTTA ACTGTCCCCT CCTATCTGTA GGAGGTGCTG GAGTCAGACG
  TGTCAAGTTC GATAACACTT TTGAAAAACC TCCAGGAGCA GGTGAGTATG TATGTCTTTT
  AGAATAAATC AGTCAGGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139575852	ENSMUSSNP6849709	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss324641582	CHEV_14_55634904	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47252095					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55253524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	within coordinates
Gm63347	predicted gene, 63347	266 bp upstream
Ngdn	neuroguidin, EIF4E binding protein	within coordinates
Rr369830	regulatory region 369830	873 bp downstream
Rr369831	regulatory region 369831	444 bp downstream
Rr404108	regulatory region 404108	1645 bp downstream
Rr492392	regulatory region 492392	603 bp distal
Rr492393	regulatory region 492393	900 bp distal
Rr492394	regulatory region 492394	277 bp distal
Rr492395	regulatory region 492395	within coordinates
Rr492396	regulatory region 492396	91 bp proximal
Tssr125743	transcription start site region 125743	496 bp downstream