rs47254342 SNP Detail

Summary

• ID
  rs47254342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32905831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGACCCCGT GCCTTAGATT TTGACCAAGT CTGTTCTTGC
  CTTTGGGTGA CTCGGTCTCA GTTGCTTCAC TTGCAAACAC CGAAGCTCAC AACATCTGTA
  Y
  ACATCAGTGA CATCATACGC AGGGTGATGT TTGGTGAGAG CATGGGGCCT CACAGGTAGG
  AGTTTCTGCC CTCCTAGAGA ATTAGTGGTC CCCTCTTGTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62679284	NES17312457	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47254342					SNP	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62679284	NES17312457	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32905831 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f15	cytochrome P450, family 4, subfamily f, polypeptide 15	within coordinates
Rr337381	regulatory region 337381	1684 bp proximal
Rr339615	regulatory region 339615	within coordinates
Rr341335	regulatory region 341335	770 bp proximal
Tssr143733	transcription start site region 143733	1261 bp downstream
Tssr143734	transcription start site region 143734	1242 bp downstream
Tssr143735	transcription start site region 143735	1214 bp downstream
Tssr143736	transcription start site region 143736	1180 bp downstream
Tssr143737	transcription start site region 143737	751 bp downstream