rs47254764 SNP Detail

Summary

• ID
  rs47254764
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13285635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGTCCTA TATCTTATTT
  TTGTGATCAA CTGTGTTGTG CCAAATTTCC AGGTATTTCT GTCCCCCAAA ATATAAATGG
  TCCCATGAAG CGCTGTGTGT CTGCAGAACA CTGATGAGTG CGTGCACTCC ATGTCCCACC
  TCCCCCACCA CAGGCAGTGC CCTCTTCCCC AGAGCTCGGT GATTACACTC TTCTCCACCC
  S
  AGACTTGCCG AGATCCACTC AACTTACTAT GACCACCTGA GATACAACAA GCAGGACCCA
  CCATTACACA GAACACCACT GTACCCCCTT TTTAGGCTCC TCGTGAAACC ATAGTGAAGT
  CAGAATGCTT TGAAGGCAAA GCAACAGTAC TCCGAAGGTG AGGTGACATA AGAGACCCTT
  CCCACCAATC AGCATTGTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60327976	NES15829354	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47254764					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60327976	NES15829354	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13285635 () rs orientation: forward

Symbol	Name	Function Class
Ncoa2	nuclear receptor coactivator 2	within coordinates
Rr370880	regulatory region 370880	within coordinates
Tssr10984	transcription start site region 10984	1683 bp downstream