rs47256889 SNP Detail

Summary

• ID
  rs47256889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126772963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCAGAAA AGGGACATGT
  TTAAAGTCGC AACCAAGGGA ACCTATTACC AACTTTCCAA ACCTTAAAAA CAAAACAAAC
  AAACAACAAC AAGACTCTTA TTCCTCAGCT GGCTAGGGAT TTAGCTCAGT CGAGCACTCG
  CCTACCATTT ATGAAGCCAT TTGAGCACGG TGGTTCATGC CTACAATCCC CACGCTACAG
  Y
  CAGACAGTCA GACTCACTGT TATTCTTGGG GAGCTCAAGG GCAGCCAGTT TCAGACCCTG
  TTTGGGGGAG GCCAAGTACT TCAGGGACCA TACCTAAAAC AAGCTTGCTA AATAGGTCAG
  TGGTGGCACA AGCCTTTAAG CTCGGCTCTT AGAGGAGGCA GAGGCAGGGG GATCTCTGTG
  TGTTTGAAGT CAGCCTGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147514269	ENSMUSSNP6309089	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47256889					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126772963 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			1724 bp proximal
Gm75308	predicted gene, 75308			1650 bp upstream
Rr564422	regulatory region 564422			1286 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			858 bp downstream
Tssr26085	transcription start site region 26085			1950 bp downstream