rs47257369 SNP Detail

Summary

• ID
  rs47257369
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114295186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCACCTT TGCGTGTGCC
  CGTCTACTTA GGCTCAGCCC CCTCTCCTCT CACCACCTGC CTCTCCGGGT TAGTCTCCCT
  ACTGCTGTGT CTGATGCTGG ATGCTTTCTG AGAAAAAAAA AAAAAAGTTT ATTTAAACTC
  AAAGTTCTGG AGGTCAAAGA GCATGGTCCT AGATTCTGTT TGACTCTGGT AAGAGCCTTC
  M
  AGTGGTCATA AGATGGTAGA TGGCCTCCTC GTGGGCACAA ATGAGGAGTG AGACAGGAGG
  CCAGCGGGAT TTGGGAGCCA GGCTTACTTT TTTCTTTTCT TTTTTTTTGG GGGGGGGGCA
  ACTCTTTCCC ACAAAGACCT CTGTCACCCG GAGACCAGCA CTAGTCTTTT CTGGAGTAGG
  CTGTGTCTCC TCACCAATGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60825938	NES16029810	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47257369					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60825938	NES16029810	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114295186 () rs orientation: forward

Symbol	Name	Function Class
Acacb	acetyl-Coenzyme A carboxylase beta	within coordinates
Rr108154	regulatory region 108154	1986 bp distal
Rr108155	regulatory region 108155	215 bp proximal
Rr120008	regulatory region 120008	within coordinates
Rr120009	regulatory region 120009	120 bp proximal
Tssr48071	transcription start site region 48071	1692 bp downstream
Tssr48072	transcription start site region 48072	1658 bp downstream
Tssr48073	transcription start site region 48073	1610 bp downstream