rs47257744 SNP Detail

Summary

• ID
  rs47257744
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151352484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCAACAA GGTACCCAGG
  AGTCACTGTG AAGAGGGTTA GTGGCTCAGT CTCTGATTGC TCCCAGAAAT CCAGGTTAGT
  TGACTAACCT GGAAGTTCAC ACCTTCTTGC CTGACAGAGA TGTCACCAGA AAAACATTTA
  ACCTTTAGCT TTCCTCCTGC TTCCCAGGAT GTTGGTTCTA ATCTAAACAC ACAGACAGGA
  A
  TCTAGTTAGC ACAGCCATCC TCTGAGAAGC TCTATCCAGC AGCTGACTGA AACAGATGCA
  GATACTCACA TCCAAACATT GGATGGAGGT CAGGGACTCT TATGAAAGAG TTGGCGGAAG
  GATTGAAGCC CCTGAATGGG ATGGGAACCT CACAGGAAGA CCAACAGAGT CAACTAACCT
  GGATTTCTGA GAGTTCTCAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss144728567	ENSMUSSNP4906758	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47257744					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151352484 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	809 bp upstream
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	856 bp upstream
Rr117371	regulatory region 117371	1884 bp distal
Rr378823	regulatory region 378823	498 bp upstream
Tssr54686	transcription start site region 54686	857 bp upstream
Tssr54687	transcription start site region 54687	832 bp upstream