rs47258160 SNP Detail

Summary

• ID
  rs47258160
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70874973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTTGTT TTGGTCTGTC
  TCTTCAGGGA ACATTATACA GAGTTTCTTT CTTGATCTGT GTGTAAAATC GGTTGTGGAG
  TCTCTCTACG TGGGTAGATG AGATGGCCTG TACTCAAGGC TGTGGTGTGC TCCTGCAGCA
  GCAGAGGTCT TTTGCAAGTG AAGCAGACCA CCTGGGTGAG TGGACCAGCC ATGGGAGCTG
  R
  CTTTCCCACA GTGGATTAGC TGATGATCCC TTGTAGGAAG GGGTGTGCCT CAATCCCAGG
  AATAGCAATG GCTTTCCATG GACCCCAGCT GGTTATTCTG ATTGGTTAGT GTGGCCAGAG
  CATGTGATAT GCTGGTCAAA TCAATGCCAG ACACTATGCT CTGTAAAAGT GCTTTCTAGA
  TGTGACTAGC ATTTGAATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52652710	NES15474572	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		G	G	G	A		G
ss324416305	CHEV_13_70865732	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47258160					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52652710	NES15474572	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70874973 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	948 bp downstream
Gm36607	predicted gene, 36607	within coordinates