rs47258745 SNP Detail

Summary

• ID
  rs47258745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:89588268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTTGAATG CGGATATCTA GTTCTTAACA CTGGTTGCTA
  GAGAAACTGC CTTTGCTGTG TTGTATAATC ATCTGACCGA ATGTGCTAGT TCAGTCCAAG
  R
  CCTTCTATGC TGTTCAGTGA TCTGTACATC ACTTTTTATG TCAGTATTGC AGTAACCTGA
  TTGTTGCTGC TTTGTAGTTG TTCCAGTCCT CACCCCCTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss148801902	ENSMUSSNP3634487	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321604693	CHEV_5_89869434	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs47258745					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89588268 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	within coordinates
Gm72766	predicted gene, 72766	within coordinates
Tssr47069	transcription start site region 47069	782 bp upstream
Tssr51709	transcription start site region 51709	1954 bp upstream
Tssr51710	transcription start site region 51710	763 bp upstream
Tssr51711	transcription start site region 51711	854 bp downstream
Tssr51712	transcription start site region 51712	1186 bp downstream
Tssr51713	transcription start site region 51713	1205 bp downstream
Tssr51714	transcription start site region 51714	1226 bp downstream
Tssr51715	transcription start site region 51715	1243 bp downstream
Tssr51716	transcription start site region 51716	1262 bp downstream
Tssr51717	transcription start site region 51717	1472 bp downstream