rs47259445 SNP Detail

Summary

• ID
  rs47259445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:68733504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGACTGAGA ACAGCCTGGG TCTATTCTGA GCTGCTCTGC
  ACTATAGGAG ACACCAGCTC AGGTTGTACC TGTTCTGAGT GACTCCATTT TATAAATTCT
  Y
  GGGCTTTACT CTAAGTCACT CCATTTTGAG AACGAGAAAG AGTGACTCTA CATTCTGTTT
  ACAGATGAAT TGACCAGCCA CGCCAGCACA CCGGGAGGCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62444789	NES17256929	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47259445					SNP	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62444789	NES17256929	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:68733504 () rs orientation: forward

Symbol	Name	Function Class
Adam7	a disintegrin and metallopeptidase domain 7	1281 bp downstream
Gm31227	predicted gene, 31227	within coordinates
Rr494580	regulatory region 494580	1640 bp distal
Rr494581	regulatory region 494581	1739 bp distal
Tssr129424	transcription start site region 129424	1963 bp downstream