rs47260531 SNP Detail

Summary

• ID
  rs47260531
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:82270453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAGAAA ATGTTCCTTT
  TGCAAAATAT AGGCAATAGC CATTTTAGCT TTTATTCAGT ATATTTTTCT GTTTTGCAGA
  TTGAATTCGG TAAACATCCA TGCAAATTCC CCAGCCTATT GGTCATTCCT GATGAAATGA
  CTTAACATCT GAATAATTTT TTACATCAAT AGGGGACTCT TTCAAATTGT CTTTCCTGAC
  M
  TTGAAAAACA TACAGGTCCT TGAGAGAGCC AAGATAATAT GTGTCAATAG AAACAAGGAA
  AGCATGACAT TACAAAGGAT TTTTGCTACT GTTTTCAGAC ATAGTTTTAA CTTCTTGTAA
  GGCAATCACA GTACAAGGGT GGAGAGGTAG ATATATAAAC ACATACACAA GGCAAACACA
  GGTGATGTTG ACATTCCTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61190087	NES16699806	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47260531					SNP	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61190087	NES16699806	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:82270453 () rs orientation: forward

Symbol	Name	Function Class
1700008H02Rik	RIKEN cDNA 1700008H02 gene	1244 bp upstream
1700031L13Rik	RIKEN cDNA 1700031L13 gene	mRNA-UTR
Tssr51487	transcription start site region 51487	730 bp downstream
Tssr51488	transcription start site region 51488	760 bp downstream