rs47261766 SNP Detail

Summary

• ID
  rs47261766
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47260780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCTTTCCA AGGGCTACTC TCTCTGCCTT TTCCCACTAA
  TCACACCTCA GCCAAAGCTA TTTTATTTAG TTTGATCTTC TGCTTATAAG CCTCAGATGG
  Y
  CCCATCATAA CTTGGAATAA CCTCCAAATT TCCATATCAC AACGTGTAAG ATGCTACTTA
  ACTGGCTGCT GACCCTCTGT CTGATGGCTC CCTGACACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148985284	ENSMUSSNP376005	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324335505	CHEV_13_47202672	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47261766					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47260780 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	444 bp distal
Dek	DEK proto-oncogene	1103 bp upstream
Rr479039	regulatory region 479039	868 bp distal
Rr479040	regulatory region 479040	246 bp distal
Rr479041	regulatory region 479041	1445 bp proximal
Tssr119626	transcription start site region 119626	1712 bp downstream
Tssr119627	transcription start site region 119627	893 bp downstream
Tssr119628	transcription start site region 119628	874 bp downstream
Tssr122369	transcription start site region 122369	1927 bp upstream
Tssr122370	transcription start site region 122370	1780 bp upstream
Tssr122371	transcription start site region 122371	1682 bp upstream
Tssr122372	transcription start site region 122372	1602 bp upstream
Tssr122373	transcription start site region 122373	1557 bp upstream
Tssr122374	transcription start site region 122374	1429 bp upstream
Tssr122375	transcription start site region 122375	1194 bp upstream
Tssr122376	transcription start site region 122376	1176 bp upstream
Tssr122377	transcription start site region 122377	1133 bp upstream
Tssr122378	transcription start site region 122378	1098 bp upstream
Tssr122379	transcription start site region 122379	1083 bp upstream
Tssr122380	transcription start site region 122380	1071 bp upstream