rs47262709 SNP Detail

Summary

• ID
  rs47262709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42208897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGTGGC CCGTCTTATG
  GCAAGATGAC CTGGCTTATG TTTAGTTAAA AGCGAATGGT GCTTGCAGAG GTTACCTTCT
  ATTGAGCTTA GGTCAGCACT GCTCTAAGCC CCTACCTTTT GAAGTGTCCT TCTCTTTTGA
  CGGTGGTGAG ATTTACTGCT TTTATCTTTT TCTTTGCAGC ATGTGGATTA ACTGATGGCC
  R
  ACGAGTACAT GGAGCCAGCC TTTTGTAACC TGCTCTTCCA ACAGTTTCTA AGAAGAAAAG
  GGAGCTCTTA AATCTAAGAA AATGCCTCGC ACGAAGCAGA TTCATCCCAG AAATCTCAGA
  GGTAAGGCTC TGTGTTCAGT GAAGAAAGGC TTCCAGTGAC CCCCATCATC AAGTGCATTG
  CTGGTACCAG GAATGCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52631032	NES15521417	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47262709					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52631032	NES15521417	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42208897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5503	CpG island 5503	1864 bp distal
Hivep1	human immunodeficiency virus type I enhancer binding protein 1	within coordinates
Rr271793	regulatory region 271793	1504 bp proximal
Rr281297	regulatory region 281297	1496 bp distal
Rr286087	regulatory region 286087	1475 bp proximal