rs47262989 SNP Detail

Summary

• ID
  rs47262989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144555678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTTAGTCT TTTGATGGTG TCCTACATTT CCTGAATGTT
  CCTTTCTTGT GCTTTACATT TTTTCATATT CTTTGCTTAT TTGGTCTAGA CCTACTTTAT
  Y
  TTTGAGTCTT GTATTCTGCC TTCTGCTTAA CTCACTGTAC TTGTAAGGGT TTTCCCTGAG
  TTTTCTAATT GGGATATTGA GGTTTTCAGT TTCACCTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147805140	ENSMUSSNP7236449	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47262989					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144555678 () rs orientation: forward

Symbol	Name	Function Class
Dtd1	D-tyrosyl-tRNA deacylase 1	within coordinates
Rr374001	regulatory region 374001	993 bp upstream
Tssr20549	transcription start site region 20549	1025 bp upstream
Tssr20550	transcription start site region 20550	1087 bp upstream
Tssr26613	transcription start site region 26613	800 bp downstream