rs47262995 SNP Detail

Summary

• ID
  rs47262995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74317045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACA AGAAAGCCTC ATTCACAAAA
  Y
  CCCACTTCCT GTGCTTAAAT GACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52661996	NES15473354	PERLEGEN	MM_PANEL2	f	SNP	C			T	C	T	C	C	C	C		T	C	C	T		C
ss144625255	ENSMUSSNP6004296	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss324434879	CHEV_13_74306374	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47262995					SNP	C	C	C	T	C	T	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52661996	NES15473354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74317045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5860	CpG island 5860	1738 bp distal
Exoc3	exocyst complex component 3	562 bp downstream
Rr284943	regulatory region 284943	45 bp distal
Slc9a3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	within coordinates