rs47263208 SNP Detail

Summary

• ID
  rs47263208
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19488975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATG GGTAAAAGCT GTAGGCTATG
  R
  GTACTAGAAT TTTAATGTTT CAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52626790	NES15515583	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	A		G	A	G	G		G
ss148742721	ENSMUSSNP5737864	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					A
ss324277960	CHEV_13_19396674	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47263208					SNP	G	G	G	G	G	G	G	A	G	A	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626790	NES15515583	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19488975 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc2	T cell receptor gamma, constant 2	255 bp downstream
Tssr118532	transcription start site region 118532	318 bp upstream
Tssr121559	transcription start site region 121559	416 bp upstream
Tssr121560	transcription start site region 121560	354 bp upstream
Tssr121561	transcription start site region 121561	183 bp downstream
Tssr121562	transcription start site region 121562	1356 bp downstream
Tssr121563	transcription start site region 121563	1497 bp downstream