rs47268501 SNP Detail

Summary

• ID
  rs47268501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98658217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG CGTGTGACAT GGACACCGTC
  Y
  GTCCATCCAT AAGGGGGAAA TTACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132705142	ENSMUSSNP2967107	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47268501					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98658217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3768	CpG island 3768	824 bp proximal
Gm57390	predicted gene, 57390	within coordinates
Nr1d1	nuclear receptor subfamily 1, group D, member 1	541 bp downstream
Rr456271	regulatory region 456271	1008 bp distal
Thra	thyroid hormone receptor alpha	within coordinates
Tssr104786	transcription start site region 104786	1114 bp downstream
Tssr104787	transcription start site region 104787	1044 bp downstream
Tssr110587	transcription start site region 110587	833 bp downstream