rs47269188 SNP Detail

Summary

• ID
  rs47269188
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65843703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGGCTC AGTGGTTAAG
  AGCACTGACT GCTCTTCCGA AGGTCCTGAG TTCAAATCCC AGCAACCACA TGGTGGCTCA
  CAACCATCTG TAATGGGATC TGATGCCCTC TCCTGCTGTG TCTGAAGACA GCAATGGTGT
  ACTCATATAC AGAAAATAAA TAAATCTTAA AAAAAAAGAA AGTATCACTT TTGCTGATGC
  R
  TAATATACCT TCTGTTATCA TGATCTTCAG GGATGTTTTC CTAAAACTCT CAAATCTCTT
  TCTTCATTGC ACTAAAAATA CTTGCATAGG TGGAACTCAC GACTTTTGGC AAACGGTGAA
  TTCAACATCT TCTCTCCTTT CTCCACCAGA GAACAAGTCT ACAGCCACTG GAGCATTGCC
  ATGTGTCGCC AGGGGCCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60417514	NES15922102	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	G		A	A	G	A
ss135254267	ENSMUSSNP4546586	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47269188					SNP	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417514	NES15922102	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65843703 () rs orientation: forward

Symbol	Name	Function Class
Rr68053	regulatory region 68053	1698 bp proximal
Rr76051	regulatory region 76051	798 bp distal
Rr76052	regulatory region 76052	49 bp proximal
Rr81263	regulatory region 81263	1960 bp proximal