rs47270081 SNP Detail

Summary

• ID
  rs47270081
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105358367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTC ATGAGTAGCA ACAAAATAAT
  Y
  TTATGGTGGT GGGGGAGGAA CTGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147504652	ENSMUSSNP2751413	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323449349	CHEV_10_104959562	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47270081					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105358367 () rs orientation: forward

Symbol	Name	Function Class
4930588G05Rik	RIKEN cDNA 4930588G05 gene	1534 bp downstream
Gm15664	predicted gene 15664	1863 bp downstream
Rr438483	regulatory region 438483	1514 bp distal
Rr438484	regulatory region 438484	8 bp proximal
Rr438485	regulatory region 438485	406 bp proximal
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr99169	transcription start site region 99169	711 bp upstream
Tssr99170	transcription start site region 99170	489 bp upstream