rs47271544 SNP Detail

Summary

• ID
  rs47271544
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121268258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAC CAGAGAGGAC AGAATGGATA
  W
  ACTCTGAATC CTGTTAAATT TTCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147386114	ENSMUSSNP1093189	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320483160	CHEV_2_121263513	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47271544					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121268258 () rs orientation: forward

Symbol	Name	Function Class
Ell3	elongation factor RNA polymerase II-like 3	1250 bp downstream
Pdia3	protein disulfide isomerase associated 3	within coordinates
Tssr19767	transcription start site region 19767	1855 bp downstream
Tssr19768	transcription start site region 19768	1413 bp downstream
Tssr19769	transcription start site region 19769	131 bp downstream
Tssr19770	transcription start site region 19770	128 bp upstream