rs47271713 SNP Detail

Summary

• ID
  rs47271713
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67384605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGGCAGC ACATAGGCAC
  ACAAGATACT AGAGAAGTAA CAGAGTTCTG CATCTGCATC TGCAGACAGC AGGAAGAGAG
  AGACTCTGGG CCCGGCTTTG GCCTTTGAAA CCTTAAAGCC CCTCCCCCAG GGACATACTT
  CCTCTAGCTA GGCCACACTT CCTAATCCTT TCAAATACTT ACACTCCCTG GTGACCAGGC
  S
  TTCAAATCTG TGAGCCTATA GGGGCTGTTC TCATTCAAAC CTCCGTGTTT ACTGTCTAAA
  AATGTATCAT TTATGTATGA AAAGCTGAAA CTGAGTAGAA CAAAAATCCT GGTGCTACTT
  TTGATATATC CTGAAATTCC AAAGGTTGTG GAGCCATTCA GTGAGTGTGA GGCTAAATGC
  CTCACAACTG TGGCTGGCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss135257892	ENSMUSSNP1114626	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs47271713					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67384605 () rs orientation: forward

Symbol	Name	Function Class
Gm42568	predicted gene 42568	within coordinates
Rarres1	retinoic acid receptor responder (tazarotene induced) 1	1700 bp downstream