rs47271737 SNP Detail

Summary

• ID
  rs47271737
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55906803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATTCCTT GTTTGTTTTT
  GTTTTGTTTT TTTGAGACAG GGTTTCTCTG TATAATGTTC CTGGCTGTCC TGGAACTCCA
  TTTGTAGACA AGGCTGTCCT GGAACTCAGA GATCTGCCTG CCTCTACCTC CTGAGTACTG
  GGGTTAAAGA CATGCACTAC CACATGTTTC CAGGAGATAT TCTTGATACA AAGTTATCAT
  R
  CTGTGATGGT GAAAGATCTC TATATTATGG ATTGGAGGTT TTTGTTTGTT GTTTTGAGAC
  AAGGTCTCAC TATGTAATAA GGCAACTGGA ATGCTGCATC CCAGCTTCTG CAGGCTGGGA
  AGATAACTGG TAGACTCCCT GGAAAACAAT TTGACAGTTC TTTTAAAGTT ATATATAACA
  TCTACACGGC CTAGTAATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62405541	NES17238180	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47271737					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62405541	NES17238180	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55906803 () rs orientation: forward

Symbol	Name	Function Class
Nedd8	neural precursor cell expressed, developmentally down-regulated gene 8	within coordinates
Rr492562	regulatory region 492562	1773 bp proximal
Tssr125802	transcription start site region 125802	1805 bp upstream