rs47272317 SNP Detail

Summary

• ID
  rs47272317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100750149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTTCAGG TTTTCCCCAC
  CTCTAAAGTT GAAAAAAAAA AAAAAAAGAG TAAAAGAGGA GGTCCAAAGA CCAGAAAGAA
  GGATCAGGAA CTCGGAATGG AAAGAAAAGA TACAAGAAGA AATTAGTAAG AGAGGAAGCC
  AATTAAAATG ATCCCTCCAG GCCACTGGGT CTTGGCCCGG ATGGTATTCG AGTAGGCAGC
  Y
  AGGCTGGCCC CTCCTTTGGT ACTGCCCATG CCAACTTCCA GGCAGAGAGG AGGCCCAGAG
  GAGAGGGAAG CTGGGCAAAG GGGATGGCAG ACTTCCAGCC TGGCCTTGTC CAACCCCTGG
  GCCTTGAGGG GAACTCTTCG GGATGGGGAC TATGATCCAG GCAAAGCTCC AGGGAGCAGG
  TCTGCTGCCC GGCAAAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132723685	ENSMUSSNP3927644	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47272317					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100750149 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	870 bp proximal
Gm72578	predicted gene, 72578	within coordinates
Rr456792	regulatory region 456792	within coordinates
Rr456793	regulatory region 456793	671 bp proximal
Rr456794	regulatory region 456794	806 bp proximal
Rr456795	regulatory region 456795	1203 bp proximal
Stat5a	signal transducer and activator of transcription 5A	28 bp upstream
Tssr104969	transcription start site region 104969	130 bp upstream
Tssr104970	transcription start site region 104970	169 bp upstream
Tssr104971	transcription start site region 104971	546 bp upstream
Tssr104972	transcription start site region 104972	788 bp upstream
Tssr104973	transcription start site region 104973	855 bp upstream
Tssr104974	transcription start site region 104974	947 bp upstream
Tssr104975	transcription start site region 104975	969 bp upstream
Tssr104976	transcription start site region 104976	1003 bp upstream
Tssr104977	transcription start site region 104977	1026 bp upstream
Tssr104978	transcription start site region 104978	1095 bp upstream
Tssr104979	transcription start site region 104979	1124 bp upstream
Tssr104980	transcription start site region 104980	1324 bp upstream