rs47273754 SNP Detail

Summary

• ID
  rs47273754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90851666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GGTAAAGAGT GGGCTCCTGC
  Y
  TGATCTACCT GGGACAGAGT CGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss148549235	ENSMUSSNP5057803	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs47273754					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90851666 () rs orientation: forward

Symbol	Name	Function Class
4931406G06Rik	RIKEN cDNA 4931406G06 gene	within coordinates
Cpgi8437	CpG island 8437	1922 bp proximal
Epcip	exosomal polycystin 1 interacting protein	within coordinates
Gm60345	predicted gene, 60345	within coordinates
Rr322308	regulatory region 322308	866 bp distal
Rr322309	regulatory region 322309	66 bp distal
Rr328102	regulatory region 328102	136 bp proximal
Tssr4953	transcription start site region 4953	1647 bp downstream
Tssr139330	transcription start site region 139330	1798 bp upstream
Tssr139331	transcription start site region 139331	1987 bp upstream
Tssr142065	transcription start site region 142065	1632 bp downstream
Tssr142066	transcription start site region 142066	1663 bp downstream
Tssr142067	transcription start site region 142067	1724 bp downstream