rs47273815 SNP Detail

Summary

• ID
  rs47273815
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:174500397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTGGAGA TCTAGAGCCA
  TGTCCAGCAT GTATCTGAAG ATTTCTTAGC ATCATCCTCC CTTTAGGAGC TATCTCTCTT
  TGGAATGAGG AAGGGGACAC CAGACAGGCA TGTCCCACAT GTTGTTTGTA GGGGAGAACA
  GAGTAGGTGG CAGCCTCTAG GAGTTAGTTC TAAGGCCATG TTCTCTCTTG TCTCTTCAAG
  Y
  ATCATTATGG CTATTCTAAC CTTACATGGA ACTGGGATTT TTGGATGTTT ATTTTCAAAG
  TGTTCATCAA ATTTTGCCAA GGTTAAACCA CTGGTATTCA GCTGTTCTCT CTGTTGCTTT
  CTTCCTGTGT TCAAACATTG TGCACCTTGG CTCTTTGTGT CCCAGTTTCC ATAATGGCCT
  TTCTTTATTC TTAAAGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146292408	ENSMUSSNP4338481	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320143618	CHEV_1_176602962	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47273815					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174500397 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	Intron
Rr423785	regulatory region 423785	1920 bp proximal
Rr423786	regulatory region 423786	1993 bp proximal