rs47273836 SNP Detail

Summary

• ID
  rs47273836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39401765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GAGCCTGTTA TTTGAAGCTG CAGAGCCACA CCCTTGGCCT AACCCCTAGC
  R
  GACTGAGGCT CTCCCATGCC TACCAGGGGG TGTTTTCCTT CCTAAACAGA           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148967741	ENSMUSSNP5474539	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss319695451	CHEV_1_39419529	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47273836					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39401765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi184	CpG island 184	557 bp distal
Gm53549	predicted gene, 53549	291 bp downstream
Npas2	neuronal PAS domain protein 2	within coordinates
Rr16114	regulatory region 16114	165 bp distal
Tssr6374	transcription start site region 6374	308 bp upstream