rs47273929 SNP Detail

Summary

• ID
  rs47273929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:34887267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGTGCC CTTCCATGAG
  AAACTCCAGC TGGAGAGATG TAGTGTCTCT TGGGTATCCC CTGCACTCCT ACCCAGAGTC
  ACCCCTGAAC CCAGCTCCAG AGAATTCCAC CACCTGCCTT CTTCCTTCTA GAATGCTTAT
  CTCCCAGGGA CTGGTCCTGA TGTCCCTCCA GCCCCCCTGA CTGTCTGATA ATAGAAAGGA
  Y
  CGAGCCTGTG GGCCAGGCCA GAGCAGTGGT TAGAGCTTTG CCTTCAGCCA ACACCATTTT
  CAGGGTACTG TACCTCCTCC CCGCAAAAGG GAAGCCTACT TATCACTTGG GTCACTGGTG
  GGGCTGGCTA TGGTGCCAGA GAGGTTCAGA GATGGTGGAG AGGAGAGCCT AGCATCAGAG
  GCTGCCAGGC TGCCAGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60993772	NES16130700	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47273929					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993772	NES16130700	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34887267 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18861	CpG island 18861			1047 bp distal
Rr645331	regulatory region 645331			1447 bp distal
Rr645332	regulatory region 645332			1853 bp distal
Slc7a10	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10			Intron
				Noncoding-Transcript-Variant
Tssr65893	transcription start site region 65893			1473 bp downstream
Tssr65894	transcription start site region 65894			1434 bp downstream
Tssr65895	transcription start site region 65895			1410 bp downstream