rs47274295 SNP Detail

Summary

• ID
  rs47274295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37872286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTACAAAA AAAAAAAAAA
  AAAGAAAAGA AAGGGCATGA AAGAGCTTTG AGAATTAGCA TGTAGAAGGG CAAGTCCCAG
  GAGGGGACCC CAGGTAACCA AGGTGACCCT CTAGTGTTGG AGGCCATGGA AACAGCTCTA
  CCCTTTGGAA GGTAAACTGC CAATATGTGT TCAAATGGAG TACCCATAGC AACCTCAGCT
  Y
  GAGGTAACCA TTATACAGAA GCCTGGGCTT TGCTGTTTGT ATGTACTCTA CTTGGCTCTC
  AGCACTGCTG ATGATAGTAA ACACCTGGAA ATGGGTTGGA AGTCTGTCAG ATAAGCCTGG
  GGGTGTAGCT TAGTGATAGA GCACCTGCCC AGCATGTGGG AGACCCTAGA TGCACTCCCC
  CATACTACAA GAAATAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61764394	NES17699332	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47274295					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61764394	NES17699332	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37872286 () rs orientation: forward

Symbol	Name	Function Class
Gm49350	predicted gene, 49350	1885 bp upstream
Rr271585	regulatory region 271585	315 bp proximal
Rr279066	regulatory region 279066	1550 bp distal
Rr279067	regulatory region 279067	723 bp proximal
Rr283303	regulatory region 283303	1916 bp proximal
Rr388282	regulatory region 388282	820 bp downstream