rs47275020 SNP Detail

Summary

• ID
  rs47275020
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:5937788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAGCTTAG TTTCTGATTG CTCTCTCTGT TCTTAGCCTG
  ACCCTGTAGT AGGATTACCA GAAAGCAGTG TGTGTTAGCT TAGCTCCCAG CAGGGCCACA
  W
  CACCGTGTTC ATAAACCCTC TTTGAACTTG TGTGTGCACA TAGAGGCGTT CATCTTCATA
  CATGCACGAG CAGCTCTGAC TACACCGCTC TTCCCTTCCC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60525966	NES16545823	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47275020					SNP	A	A	A	A	A	A	T	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525966	NES16545823	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:5937788 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8563	CpG island 8563	352 bp distal
Rr332307	regulatory region 332307	1588 bp distal
Rr332309	regulatory region 332309	13 bp proximal
Rr335511	regulatory region 335511	613 bp proximal
Rr338132	regulatory region 338132	1837 bp proximal
Rr342320	regulatory region 342320	within coordinates
Rr370166	regulatory region 370166	1805 bp downstream
Snx9	sorting nexin 9	within coordinates